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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../data/experiment/html/leeBamViews.html below:

Bioconductor - leeBamViews (development version)

leeBamViews

This is the development version of leeBamViews; for the stable release version, see leeBamViews.

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: Development (3.22)

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("leeBamViews")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("leeBamViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("leeBamViews")
managing multiple NGS samples with bamViews PDF R Script Reference Manual PDF Details biocViews ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData Version 1.45.0 License Artistic 2.0 Depends R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome Imports GenomicRanges, GenomicAlignments, methods, S4Vectors, parallel, IRanges System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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