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Bioconductor - ewceData (development version)

This is the development version of ewceData; for the stable release version, see ewceData.

Bioconductor version: Development (3.22)

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Author: Alan Murphy [cre] ORCID: 0000-0002-2487-8753 , Nathan Skene [aut] ORCID: 0000-0002-6807-3180

Maintainer: Alan Murphy <alanmurph94 at hotmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ewceData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ewceData")

Follow Installation instructions to use this package in your R session.

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