This is the development version of MerfishData; for the stable release version, see MerfishData.
Collection of public MERFISH datasetsBioconductor version: Development (3.22)
MerfishData is an ExperimentHub package that serves publicly available datasets obtained with Multiplexed Error-Robust Fluorescence in situ Hybridization (MERFISH). MERFISH is a massively multiplexed single-molecule imaging technology capable of simultaneously measuring the copy number and spatial distribution of hundreds to tens of thousands of RNA species in individual cells. The scope of the package is to provide MERFISH data for benchmarking and analysis.
Author: Ludwig Geistlinger [aut, cre] ORCID: 0000-0002-2495-5464 , Tyrone Lee [ctb], Helena Crowell [ctb] ORCID: 0000-0002-4801-1767 , Daniela Corbetta [ctb], Jeffrey Moffitt [aut], Robert Gentleman [aut]
Maintainer: Ludwig Geistlinger <ludwig_geistlinger at hms.harvard.edu>
Citation (from within R, entercitation("MerfishData")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MerfishData")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MerfishData")Follow Installation instructions to use this package in your R session.
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