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Bioconductor - HiCDataHumanIMR90 (development version)

HiCDataHumanIMR90

This is the development version of HiCDataHumanIMR90; for the stable release version, see HiCDataHumanIMR90.

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Bioconductor version: Development (3.22)

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiCDataHumanIMR90")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")
HiC Data Human Fibroblast Dixon et al. 2012 PDF R Script Reference Manual PDF Details See More Package Archives

Follow Installation instructions to use this package in your R session.

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