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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../data/experiment/html/CoSIAdata.html below:

Bioconductor - CoSIAdata (development version)

CoSIAdata

This is the development version of CoSIAdata; for the stable release version, see CoSIAdata.

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Bioconductor version: Development (3.22)

Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.

Author: Anisha Haldar [aut] ORCID: 0000-0002-1395-9793 , Vishal H. Oza [aut] ORCID: 0000-0001-6990-0267 , Amanda D. Clark [cre, aut] ORCID: 0000-0002-1186-3114 , Nathaniel S. DeVoss [aut] ORCID: 0000-0003-0465-2770 , Brittany N. Lasseigne [aut] ORCID: 0000-0002-1642-8904

Maintainer: Amanda D. Clark <amanda at freshairfamily.org>

Citation (from within R, enter citation("CoSIAdata")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CoSIAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoSIAdata")
Details biocViews Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, OrganismData, PackageTypeData, RNASeqData, Rattus_norvegicus_Data, SequencingData, Tissue Version 1.9.0 License MIT + file LICENSE Depends R (>= 4.3.0), ExperimentHub(>= 2.6.0) Imports System Requirements URL Bug Reports https://github.com/lasseignelab/CoSIAdata/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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