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Bioconductor - EuPathDB (development version)

EuPathDB

This is the development version of EuPathDB; for the stable release version, see EuPathDB.

Provides access to pathogen annotation resources available on EuPathDB databases

Bioconductor version: Development (3.22)

Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.

Author: Keith Hughitt [aut, cre]

Maintainer: Keith Hughitt <keith.hughitt at gmail.com>

Citation (from within R, enter citation("EuPathDB")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("EuPathDB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EuPathDB")
Details biocViews AnnotationData, AnnotationHub, DataImport, EuPathDB Version 1.0.1 License Artistic-2.0 Depends R (>= 3.5), Biobase, GenomicRanges, GenomeInfoDbData, AnnotationHub(>= 2.13.8) Imports AnnotationHubData, Biostrings, BiocManager, utils System Requirements URL https://github.com/khughitt/EuPathDB Bug Reports https://github.com/khughitt/EuPathDB/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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