This is the development version of spatialFDA; for the stable release version, see spatialFDA.
A Tool for Spatial Multi-sample ComparisonsBioconductor version: Development (3.22)
spatialFDA is a package to calculate spatial statistics metrics. The package takes a SpatialExperiment object and calculates spatial statistics metrics using the package spatstat. Then it compares the resulting functions across samples/conditions using functional additive models as implemented in the package refund. Furthermore, it provides exploratory visualisations using functional principal component analysis, as well implemented in refund.
Author: Martin Emons [aut, cre] ORCID: 0009-0000-5219-5311 , Samuel Gunz [aut] ORCID: 0000-0002-8909-0932 , Mark Robinson [aut, fnd] ORCID: 0000-0002-3048-5518
Maintainer: Martin Emons <martin.emons at uzh.ch>
Citation (from within R, entercitation("spatialFDA")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("spatialFDA")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spatialFDA")Follow Installation instructions to use this package in your R session.
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