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Bioconductor - packFinder (development version)

This is the development version of packFinder; for the stable release version, see packFinder.

Bioconductor version: Development (3.22)

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

Author: Jack Gisby [aut, cre] ORCID: 0000-0003-0511-8123 , Marco Catoni [aut] ORCID: 0000-0002-3258-2522

Maintainer: Jack Gisby <jackgisby at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("packFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("packFinder")

Follow Installation instructions to use this package in your R session.

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