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Bioconductor - optimalFlow (development version)

optimalFlow

This is the development version of optimalFlow; for the stable release version, see optimalFlow.

optimalFlow

Bioconductor version: Development (3.22)

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")
optimalFlow: optimal-transport approach to Flow Cytometry analysis HTML R Script Reference Manual PDF Details biocViews FlowCytometry, Software, Technology Version 1.21.0 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License Artistic-2.0 Depends dplyr, optimalFlowData, rlang (>= 0.4.0) Imports transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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