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Bioconductor - omicsPrint (development version)

omicsPrint

This is the development version of omicsPrint; for the stable release version, see omicsPrint.

Cross omic genetic fingerprinting

Bioconductor version: Development (3.22)

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Citation (from within R, enter citation("omicsPrint")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("omicsPrint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")
omicsPrint: detection of data linkage errors in multiple omics studies HTML R Script Reference Manual PDF NEWS Text Details biocViews DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL (>= 2) Depends R (>= 3.5), MASS Imports methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment System Requirements URL See More Suggests BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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