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Bioconductor - methimpute (development version)

methimpute

This is the development version of methimpute; for the stable release version, see methimpute.

Imputation-guided re-construction of complete methylomes from WGBS data

Bioconductor version: Development (3.22)

This package implements functions for calling methylation for all cytosines in the genome.

Author: Aaron Taudt

Maintainer: Aaron Taudt <aaron.taudt at gmail.com>

Citation (from within R, enter citation("methimpute")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methimpute")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methimpute")
Details biocViews Coverage, DNAMethylation, Epigenetics, HiddenMarkovModel, ImmunoOncology, Sequencing, Software Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 3.5.0), GenomicRanges, ggplot2 Imports Rcpp (>= 0.12.4.5), methods, utils, grDevices, stats, GenomeInfoDb, IRanges, Biostrings, reshape2, minpack.lm, data.table System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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