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Bioconductor - globaltest (development version)

globaltest

This is the development version of globaltest; for the stable release version, see globaltest.

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Bioconductor version: Development (3.22)

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos, Aldo Solari, Dominic Edelmann

Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>

Citation (from within R, enter citation("globaltest")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("globaltest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globaltest")
Details biocViews Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software Version 5.63.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License GPL (>= 2) Depends methods, survival Imports Biobase, AnnotationDbi, annotate, graphics System Requirements URL See More Suggests vsn, golubEsets, KEGGREST, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS, boot, rpart, mstate Linking To Enhances Depends On Me GlobalAncova Imports Me BiSeq, EGSEA, SIM, miRtest Suggests Me topGO, GiANT, penalized Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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