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Bioconductor - gDRutils (development version)

gDRutils

This is the development version of gDRutils; for the stable release version, see gDRutils.

A package with helper functions for processing drug response data

Bioconductor version: Development (3.22)

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Author: Bartosz Czech [aut] ORCID: 0000-0002-9908-3007 , Arkadiusz Gladki [cre, aut] ORCID: 0000-0002-7059-6378 , Aleksander Chlebowski [aut], Marc Hafner [aut] ORCID: 0000-0003-1337-7598 , Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRutils")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRutils")
Details biocViews Infrastructure, Software Version 1.7.12 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License Artistic-2.0 Depends R (>= 4.2) Imports BiocParallel, BumpyMatrix, checkmate, data.table, digest, drc, jsonlite, jsonvalidate, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment, qs, utils System Requirements URL https://github.com/gdrplatform/gDRutils https://gdrplatform.github.io/gDRutils/ Bug Reports https://github.com/gdrplatform/gDRutils/issues See More Suggests BiocManager, BiocStyle, futile.logger, gDRstyle(>= 1.7.1), gDRtestData(>= 1.7.1), IRanges, knitr, lintr, mockery, purrr, rcmdcheck, rmarkdown, scales, testthat, tools, withr, yaml Linking To Enhances Depends On Me gDR Imports Me gDRcore, gDRimport Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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