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Bioconductor - cmapR (development version)

This is the development version of cmapR; for the stable release version, see cmapR.

Bioconductor version: Development (3.22)

The Connectivity Map (CMap) is a massive resource of perturbational gene expression profiles built by researchers at the Broad Institute and funded by the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. Please visit https://clue.io for more information. The cmapR package implements methods to parse, manipulate, and write common CMap data objects, such as annotated matrices and collections of gene sets.

Author: Ted Natoli [aut, cre] ORCID: 0000-0002-0953-0206

Maintainer: Ted Natoli <ted.e.natoli at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cmapR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cmapR")

Follow Installation instructions to use this package in your R session.

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