This is the development version of cbpManager; for the stable release version, see cbpManager.
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer GenomicsBioconductor version: Development (3.22)
This R package provides an R Shiny application that enables the user to generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics. Create cancer studies and edit its metadata. Upload mutation data of a patient that will be concatenated to the data_mutation_extended.txt file of the study. Create and edit clinical patient data, sample data, and timeline data. Create custom timeline tracks for patients.
Author: Arsenij Ustjanzew [aut, cre, cph] ORCID: 0000-0002-1014-4521 , Federico Marini [aut] ORCID: 0000-0003-3252-7758
Maintainer: Arsenij Ustjanzew <arsenij.ustjanzew at gmail.com>
Citation (from within R, entercitation("cbpManager")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cbpManager")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cbpManager")Follow Installation instructions to use this package in your R session.
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