This is the development version of cBioPortalData; for the stable release version, see cBioPortalData.
Exposes and Makes Available Data from the cBioPortal Web ResourcesBioconductor version: Development (3.22)
The cBioPortalData R package accesses study datasets from the cBio Cancer Genomics Portal. It accesses the data either from the pre-packaged zip / tar files or from the API interface that was recently implemented by the cBioPortal Data Team. The package can provide data in either tabular format or with MultiAssayExperiment object that uses familiar Bioconductor data representations.
Author: Levi Waldron [aut], Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Karim Mezhoud [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
Citation (from within R, entercitation("cBioPortalData")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cBioPortalData")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cBioPortalData")Follow Installation instructions to use this package in your R session.
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