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Bioconductor - TTMap (development version)

TTMap

This is the development version of TTMap; for the stable release version, see TTMap.

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: Development (3.22)

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>

Citation (from within R, enter citation("TTMap")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TTMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TTMap")
Details biocViews Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software Version 1.31.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-2 Depends rgl, colorRamps Imports grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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