This is the development version of TADCompare; for the stable release version, see TADCompare.
TADCompare: Identification and characterization of differential TADsBioconductor version: Development (3.22)
TADCompare is an R package designed to identify and characterize differential Topologically Associated Domains (TADs) between multiple Hi-C contact matrices. It contains functions for finding differential TADs between two datasets, finding differential TADs over time and identifying consensus TADs across multiple matrices. It takes all of the main types of HiC input and returns simple, comprehensive, easy to analyze results.
Author: Mikhail Dozmorov [aut, cre] ORCID: 0000-0002-0086-8358 , Kellen Cresswell [aut]
Maintainer: Mikhail Dozmorov <mikhail.dozmorov at gmail.com>
Citation (from within R, entercitation("TADCompare")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TADCompare")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TADCompare")Follow Installation instructions to use this package in your R session.
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