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Bioconductor - SeqVarTools (development version)

SeqVarTools

This is the development version of SeqVarTools; for the stable release version, see SeqVarTools.

Tools for variant data

Bioconductor version: Development (3.22)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp

Maintainer: Stephanie M. Gogarten <sdmorris at uw.edu>

Citation (from within R, enter citation("SeqVarTools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SeqVarTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")
Details biocViews GeneticVariability, Genetics, SNP, Sequencing, Software Version 1.47.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License GPL-3 Depends SeqArray Imports grDevices, graphics, stats, methods, Biobase, BiocGenerics, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, logistf, Matrix, data.table System Requirements URL https://github.com/smgogarten/SeqVarTools See More Package Archives

Follow Installation instructions to use this package in your R session.

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