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Bioconductor - RcwlPipelines (development version)

RcwlPipelines

This is the development version of RcwlPipelines; for the stable release version, see RcwlPipelines.

Bioinformatics pipelines based on Rcwl

Bioconductor version: Development (3.22)

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")
Details biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep Version 1.25.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License GPL-2 Depends R (>= 3.6), Rcwl, BiocFileCache Imports rappdirs, methods, utils, git2r, httr, S4Vectors System Requirements nodejs URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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