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Bioconductor - RNAmodR.ML (development version)

RNAmodR.ML

This is the development version of RNAmodR.ML; for the stable release version, see RNAmodR.ML.

Detecting patterns of post-transcriptional modifications using machine learning

Bioconductor version: Development (3.22)

RNAmodR.ML extend the functionality of the RNAmodR package and classical detection strategies towards detection through machine learning models. RNAmodR.ML provides classes, functions and an example workflow to establish a detection stratedy, which can be packaged.

Author: Felix G.M. Ernst [aut, cre] ORCID: 0000-0001-5064-0928 , Denis L.J. Lafontaine [ctb]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.ML")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RNAmodR.ML")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.ML")
Details biocViews Infrastructure, Sequencing, Software, Visualization, WorkflowStep Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License Artistic-2.0 Depends R (>= 3.6), RNAmodR Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, stats, ranger System Requirements URL https://github.com/FelixErnst/RNAmodR.ML Bug Reports https://github.com/FelixErnst/RNAmodR.ML/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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