This is the development version of PIPETS; for the stable release version, see PIPETS.
Poisson Identification of PEaks from Term-Seq dataBioconductor version: Development (3.22)
PIPETS provides statistically robust analysis for 3'-seq/term-seq data. It utilizes a sliding window approach to apply a Poisson Distribution test to identify genomic positions with termination read coverage that is significantly higher than the surrounding signal. PIPETS then condenses proximal signal and produces strand specific results that contain all significant termination peaks.
Author: Quinlan Furumo [aut, cre] ORCID: 0000-0003-4486-302X
Maintainer: Quinlan Furumo <furumo at bc.edu>
Citation (from within R, entercitation("PIPETS")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("PIPETS")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PIPETS")Follow Installation instructions to use this package in your R session.
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