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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../bioc/html/MsBackendRawFileReader.html below:

Bioconductor - MsBackendRawFileReader (development version)

MsBackendRawFileReader

This is the development version of MsBackendRawFileReader; for the stable release version, see MsBackendRawFileReader.

Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

Bioconductor version: Development (3.22)

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Author: Christian Panse [aut, cre] ORCID: 0000-0003-1975-3064 , Tobias Kockmann [aut] ORCID: 0000-0002-1847-885X , Roger Gine Bertomeu [ctb] ORCID: 0000-0003-0288-9619

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("MsBackendRawFileReader")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsBackendRawFileReader")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendRawFileReader")
On Using and Extending the `MsBackendRawFileReader` Backend. HTML R Script Reference Manual PDF NEWS Text INSTALL Text Details biocViews MassSpectrometry, Metabolomics, Proteomics, Software Version 1.15.1 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License GPL-3 Depends R (>= 4.1), methods, Spectra(>= 1.15.10) Imports ProtGenerics(>= 1.35.3), MsCoreUtils, S4Vectors, IRanges, rawrr(>= 1.17.2), utils, BiocParallel System Requirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. URL https://github.com/fgcz/MsBackendRawFileReader Bug Reports https://github.com/fgcz/MsBackendRawFileReader/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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