This is the development version of MsBackendMetaboLights; for the stable release version, see MsBackendMetaboLights.
Retrieve Mass Spectrometry Data from MetaboLightsBioconductor version: Development (3.22)
MetaboLights is one of the main public repositories for storage of metabolomics experiments, which includes analysis results as well as raw data. The MsBackendMetaboLights package provides functionality to retrieve and represent mass spectrometry (MS) data from MetaboLights. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetaboLights package.
Author: Johannes Rainer [aut, cre] ORCID: 0000-0002-6977-7147 , Philippine Louail [aut] ORCID: 0009-0007-5429-6846
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
Citation (from within R, entercitation("MsBackendMetaboLights")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MsBackendMetaboLights")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMetaboLights")Follow Installation instructions to use this package in your R session.
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