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Bioconductor - MEAL (development version)

MEAL

This is the development version of MEAL; for the stable release version, see MEAL.

Perform methylation analysis

Bioconductor version: Development (3.22)

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

Author: Carlos Ruiz-Arenas [aut, cre], Juan R. Gonzalez [aut]

Maintainer: Xavier Escribà Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("MEAL")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MEAL")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEAL")
Details biocViews DNAMethylation, Microarray, Software, WholeGenome Version 1.39.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License Artistic-2.0 Depends R (>= 3.6.0), Biobase, MultiDataSet Imports GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA, graphics, stats, utils, matrixStats System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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