This is the development version of FindIT2; for the stable release version, see FindIT2.
find influential TF and Target based on multi-omics dataBioconductor version: Development (3.22)
This package implements functions to find influential TF and target based on different input type. It have five module: Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate regulation potential(calcRP module), Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), Find influential TF based on different input(Find influential TF module), Calculate peak-gene or peak-peak correlation(peakGeneCor module). And there are also some other useful function like integrate different source information, calculate jaccard similarity for your TF.
Author: Guandong Shang [aut, cre] ORCID: 0000-0002-9509-0314
Maintainer: Guandong Shang <shangguandong1996 at 163.com>
Citation (from within R, entercitation("FindIT2")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("FindIT2")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FindIT2")Follow Installation instructions to use this package in your R session.
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