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Bioconductor - DExMA (development version)

DExMA

This is the development version of DExMA; for the stable release version, see DExMA.

Differential Expression Meta-Analysis

Bioconductor version: Development (3.22)

performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.

Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]

Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>

Citation (from within R, enter citation("DExMA")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DExMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DExMA")
Differential Expression Meta-Analysis with DExMA package PDF R Script Reference Manual PDF NEWS Text Details biocViews DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod Version 1.17.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License GPL-2 Depends R (>= 4.1), DExMAdata Imports Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils, bnstruct, RColorBrewer, grDevices System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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