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Bioconductor - BEclear (development version)

BEclear

This is the development version of BEclear; for the stable release version, see BEclear.

Correction of batch effects in DNA methylation data

Bioconductor version: Development (3.22)

Provides functions to detect and correct for batch effects in DNA methylation data. The core function is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

Author: Livia Rasp [aut, cre] ORCID: 0000-0003-0164-2163 , Markus Merl [aut], Ruslan Akulenko [aut]

Maintainer: Livia Rasp <livia.rasp at gmail.com>

Citation (from within R, enter citation("BEclear")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BEclear")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEclear")
Details biocViews BatchEffect, DNAMethylation, Preprocessing, Software, StatisticalMethod Version 2.25.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License GPL-3 Depends BiocParallel(>= 1.14.2) Imports futile.logger, Rdpack, Matrix, data.table (>= 1.11.8), Rcpp, abind, stats, graphics, utils, methods, dixonTest, ids System Requirements C++11 URL https://github.com/uds-helms/BEclear Bug Reports https://github.com/uds-helms/BEclear/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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