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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/vidger.html below:

Bioconductor - vidger (development version)

vidger

This is the development version of vidger; for the stable release version, see vidger.

Create rapid visualizations of RNAseq data in R

Bioconductor version: Development (3.22)

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Author: Brandon Monier [aut, cre], Adam McDermaid [aut], Jing Zhao [aut], Qin Ma [aut, fnd]

Maintainer: Brandon Monier <brandon.monier at gmail.com>

Citation (from within R, enter citation("vidger")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("vidger")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vidger")
Details biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-3 | file LICENSE Depends R (>= 3.5) Imports Biobase, DESeq2, edgeR, GGally, ggplot2, ggrepel, knitr, RColorBrewer, rmarkdown, scales, stats, SummarizedExperiment, tidyr, utils System Requirements URL https://github.com/btmonier/vidger https://bioconductor.org/packages/release/bioc/html/vidger.html Bug Reports https://github.com/btmonier/vidger/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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