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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/tracktables.html below:

Bioconductor - tracktables (development version)

tracktables

This is the development version of tracktables; for the stable release version, see tracktables.

Build IGV tracks and HTML reports

Bioconductor version: Development (3.22)

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")
Details biocViews ReportWriting, Sequencing, Software Version 1.43.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL (>= 3) Depends R (>= 3.5.0) Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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