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Bioconductor - siggenes (development version)

siggenes

This is the development version of siggenes; for the stable release version, see siggenes.

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Bioconductor version: Development (3.22)

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("siggenes")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("siggenes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("siggenes")
Details biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software Version 1.83.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License LGPL (>= 2) Depends Biobase, multtest, splines, methods Imports stats4, grDevices, graphics, stats, scrime (>= 1.2.5) System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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