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Bioconductor - rhdf5 (development version)

rhdf5

This is the development version of rhdf5; for the stable release version, see rhdf5.

R Interface to HDF5

Bioconductor version: Development (3.22)

This package provides an interface between HDF5 and R. HDF5's main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.

Author: Bernd Fischer [aut], Mike Smith [aut, cre] ORCID: 0000-0002-7800-3848 , Gregoire Pau [aut], Martin Morgan [ctb], Daniel van Twisk [ctb]

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("rhdf5")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rhdf5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5")

Details See More Suggests bit64, BiocStyle, knitr, rmarkdown, testthat, bench, dplyr, ggplot2, mockery, BiocParallel Linking To Rhdf5lib Enhances Depends On Me GSCA, h5mread, HiCBricks, LoomExperiment, MuData, octad Imports Me alabaster.base, alabaster.bumpy, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.spatial, BayesSpace, BgeeCall, biomformat, bnbc, bsseq, chihaya, CiteFuse, cmapR, CoGAPS, CopyNumberPlots, cTRAP, cytomapper, diffHic, DropletUtils, epigraHMM, EventPointer, FRASER, GenomicScores, gep2pep, h5vc, HDF5Array, HicAggR, HiCcompare, HiCExperiment, IONiseR, mariner, methodical, MOFA2, MoleculeExperiment, phantasus, plotgardener, ptairMS, PureCN, recountmethylation, ribor, scCB2, scMitoMut, scone, scRNAseqApp, signatureSearch, SpliceWiz, SpotClean, SurfR, TENxIO, trackViewer, MafH5.gnomAD.v4.0.GRCh38, MethylSeqData, ptairData, scMultiome, signatureSearchData, TumourMethData, bioRad, ebvcube, file2meco, karyotapR, LOMAR, NEONiso, rDataPipeline Suggests Me beachmat.hdf5, edgeR, HiCDOC, HiCParser, mia, pairedGSEA, phantasusLite, rhdf5filters, SCArray, scviR, slalom, SpatialFeatureExperiment, spatialHeatmap, Spectra, SummarizedExperiment, tximport, Voyager, xcms, zellkonverter, ClustAssess, conos, CRMetrics, io, MplusAutomation, neonstore, neonUtilities, SignacX, SpatialDDLS Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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