This is the development version of rGADEM; for the stable release version, see rGADEM.
de novo motif discoveryBioconductor version: Development (3.22)
rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.
Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li
Maintainer: Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>
Citation (from within R, entercitation("rGADEM")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rGADEM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews ChIPSeq, ChIPchip, Microarray, MotifDiscovery, Sequencing, Software Version 2.57.0 In Bioconductor since BioC 2.6 (R-2.11) (15 years) License Artistic-2.0 Depends R (>= 2.11.0), Biostrings, IRanges, BSgenome, methods, seqLogo Imports Biostrings, GenomicRanges, methods, graphics, seqLogo System Requirements URL See More Package ArchivesFollow Installation instructions to use this package in your R session.
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