This is the development version of pathlinkR; for the stable release version, see pathlinkR.
Analyze and interpret RNA-Seq resultsBioconductor version: Development (3.22)
pathlinkR is an R package designed to facilitate analysis of RNA-Seq results. Specifically, our aim with pathlinkR was to provide a number of tools which take a list of DE genes and perform different analyses on them, aiding with the interpretation of results. Functions are included to perform pathway enrichment, with muliplte databases supported, and tools for visualizing these results. Genes can also be used to create and plot protein-protein interaction networks, all from inside of R.
Author: Travis Blimkie [cre] ORCID: 0000-0001-8778-8627 , Andy An [aut]
Maintainer: Travis Blimkie <travis.m.blimkie at gmail.com>
Citation (from within R, entercitation("pathlinkR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("pathlinkR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathlinkR")Follow Installation instructions to use this package in your R session.
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