This is the development version of gaga; for the stable release version, see gaga.
GaGa hierarchical model for high-throughput data analysisBioconductor version: Development (3.22)
Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).
Author: David Rossell <rosselldavid at gmail.com>.
Maintainer: David Rossell <rosselldavid at gmail.com>
Citation (from within R, entercitation("gaga")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("gaga")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gaga")
Details biocViews Classification, DifferentialExpression, ImmunoOncology, MassSpectrometry, MultipleComparison, OneChannel, Software Version 2.55.0 In Bioconductor since BioC 2.2 (R-2.7) (17 years) License GPL (>= 2) Depends R (>= 2.8.0), Biobase, coda, EBarrays, mgcv Imports System Requirements URL See More Suggests Linking To Enhances parallel Depends On Me Imports Me casper Suggests Me Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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