This is the development version of diffUTR; for the stable release version, see diffUTR.
diffUTR: Streamlining differential exon and 3' UTR usageBioconductor version: Development (3.22)
The diffUTR package provides a uniform interface and plotting functions for limma/edgeR/DEXSeq -powered differential bin/exon usage. It includes in addition an improved version of the limma::diffSplice method. Most importantly, diffUTR further extends the application of these frameworks to differential UTR usage analysis using poly-A site databases.
Author: Pierre-Luc Germain [cre, aut] ORCID: 0000-0003-3418-4218 , Stefan Gerber [aut]
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
Citation (from within R, entercitation("diffUTR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("diffUTR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("diffUTR")Follow Installation instructions to use this package in your R session.
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