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Bioconductor - breakpointR (development version)

breakpointR

This is the development version of breakpointR; for the stable release version, see breakpointR.

Find breakpoints in Strand-seq data

Bioconductor version: Development (3.22)

This package implements functions for finding breakpoints, plotting and export of Strand-seq data.

Author: David Porubsky, Ashley Sanders, Aaron Taudt

Maintainer: David Porubsky <david.porubsky at gmail.com>

Citation (from within R, enter citation("breakpointR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("breakpointR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("breakpointR")
Details biocViews Coverage, DNASeq, Sequencing, SingleCell, Software Version 1.27.0 In Bioconductor since BioC 3.8 (R-3.5) (6.5 years) License file LICENSE Depends R (>= 3.5), GenomicRanges, cowplot, breakpointRdata Imports methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb(>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach System Requirements URL https://github.com/daewoooo/BreakPointR See More Package Archives

Follow Installation instructions to use this package in your R session.

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