A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/VaSP.html below:

Bioconductor - VaSP (development version)

VaSP

This is the development version of VaSP; for the stable release version, see VaSP.

Quantification and Visualization of Variations of Splicing in Population

Bioconductor version: Development (3.22)

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.)

Author: Huihui Yu [aut, cre] ORCID: 0000-0003-2725-1937 , Qian Du [aut] ORCID: 0000-0003-3864-8745 , Chi Zhang [aut] ORCID: 0000-0002-1827-8137

Maintainer: Huihui Yu <yuhuihui2011 at foxmail.com>

Citation (from within R, enter citation("VaSP")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("VaSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VaSP")
Details biocViews AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization Version 1.21.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL (>= 2.0) Depends R (>= 4.0), ballgown Imports IRanges, GenomicRanges, S4Vectors, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods System Requirements URL https://github.com/yuhuihui2011/VaSP Bug Reports https://github.com/yuhuihui2011/VaSP/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4