This is the development version of TRESS; for the stable release version, see TRESS.
Toolbox for mRNA epigenetics sequencing analysisBioconductor version: Development (3.22)
This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.
Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]
Maintainer: Zhenxing Guo <guozhenxing at cuhk.edu.cn>
Citation (from within R, entercitation("TRESS")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TRESS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software Version 1.15.0 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License GPL-3 + file LICENSE Depends R (>= 4.1.0), parallel, S4Vectors Imports utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi System Requirements URL See More Package ArchivesFollow Installation instructions to use this package in your R session.
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