This is the development version of TMSig; for the stable release version, see TMSig.
Tools for Molecular SignaturesBioconductor version: Development (3.22)
The TMSig package contains tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene or kinase sets). It includes fast, memory efficient functions to construct sparse incidence and similarity matrices and filter, cluster, invert, and decompose sets. Additionally, bubble heatmaps can be created to visualize the results of any differential or molecular signatures analysis.
Author: Tyler Sagendorf [aut, cre] ORCID: 0000-0003-1552-4870 , Di Wu [ctb], Gordon Smyth [ctb]
Maintainer: Tyler Sagendorf <tyler.sagendorf at pnnl.gov>
Citation (from within R, entercitation("TMSig")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TMSig")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TMSig")Follow Installation instructions to use this package in your R session.
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