This is the development version of TFARM; for the stable release version, see TFARM.
Transcription Factors Association Rules MinerBioconductor version: Development (3.22)
It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.
Author: Liuba Nausicaa Martino, Alice Parodi, Gaia Ceddia, Piercesare Secchi, Stefano Campaner, Marco Masseroli
Maintainer: Liuba Nausicaa Martino <liuban.martino at gmail.com>
Citation (from within R, entercitation("TFARM")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TFARM")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TFARM")Follow Installation instructions to use this package in your R session.
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