This is the development version of Site2Target; for the stable release version, see Site2Target.
An R package to associate peaks and target genesBioconductor version: Development (3.22)
Statistics implemented for both peak-wise and gene-wise associations. In peak-wise associations, the p-value of the target genes of a given set of peaks are calculated. Negative binomial or Poisson distributions can be used for modeling the unweighted peaks targets and log-nromal can be used to model the weighted peaks. In gene-wise associations a table consisting of a set of genes, mapped to specific peaks, is generated using the given rules.
Author: Peyman Zarrineh [cre, aut] ORCID: 0000-0003-4820-4101
Maintainer: Peyman Zarrineh <peyman.zarrineh at manchester.ac.uk>
Citation (from within R, entercitation("Site2Target")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Site2Target")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Site2Target")Follow Installation instructions to use this package in your R session.
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