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Bioconductor - SUITOR (development version)

SUITOR

This is the development version of SUITOR; for the stable release version, see SUITOR.

Selecting the number of mutational signatures through cross-validation

Bioconductor version: Development (3.22)

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Author: DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Citation (from within R, enter citation("SUITOR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SUITOR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SUITOR")
SUITOR: selecting the number of mutational signatures PDF R Script Reference Manual PDF NEWS Text Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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