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Bioconductor - SIMAT (development version)

SIMAT

This is the development version of SIMAT; for the stable release version, see SIMAT.

GC-SIM-MS data processing and alaysis tool

Bioconductor version: Development (3.22)

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Author: M. R. Nezami Ranjbar <nranjbar at vt.edu>

Maintainer: M. R. Nezami Ranjbar <nranjbar at vt.edu>

Citation (from within R, enter citation("SIMAT")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SIMAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SIMAT")

Details biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software Version 1.41.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License GPL-2 Depends R (>= 3.5.0), Rcpp (>= 0.11.3) Imports mzR, ggplot2, grid, reshape2, grDevices, stats, utils System Requirements URL http://omics.georgetown.edu/SIMAT.html See More Package Archives

Follow Installation instructions to use this package in your R session.

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