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Bioconductor - PAIRADISE (development version)

PAIRADISE

This is the development version of PAIRADISE; for the stable release version, see PAIRADISE.

PAIRADISE: Paired analysis of differential isoform expression

Bioconductor version: Development (3.22)

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Citation (from within R, enter citation("PAIRADISE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PAIRADISE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")
Details biocViews AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod Version 1.25.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License MIT + file LICENSE Depends R (>= 3.6), nloptr Imports SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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