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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/MsBackendMsp.html below:

Bioconductor - MsBackendMsp (development version)

MsBackendMsp

This is the development version of MsBackendMsp; for the stable release version, see MsBackendMsp.

Mass Spectrometry Data Backend for NIST msp Files

Bioconductor version: Development (3.22)

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Author: Neumann Steffen [aut] ORCID: 0000-0002-7899-7192 , Johannes Rainer [aut, cre] ORCID: 0000-0002-6977-7147 , Michael Witting [ctb] ORCID: 0000-0002-1462-4426

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MsBackendMsp")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsBackendMsp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMsp")
Details biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software Version 1.13.0 In Bioconductor since BioC 3.15 (R-4.2) (3 years) License Artistic-2.0 Depends R (>= 4.1.0), Spectra(>= 1.5.14) Imports ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats System Requirements URL https://github.com/RforMassSpectrometry/MsBackendMsp Bug Reports https://github.com/RforMassSpectrometry/MsBackendMsp/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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