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Bioconductor - MouseFM (development version)

MouseFM

This is the development version of MouseFM; for the stable release version, see MouseFM.

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: Development (3.22)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] ORCID: 0000-0002-4728-3357 , Inken Wohlers [aut] ORCID: 0000-0003-4004-0464 , Hauke Busch [aut] ORCID: 0000-0003-4763-4521

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")
Details biocViews BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL-3 Depends R (>= 4.0.0) Imports httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges System Requirements URL Bug Reports https://github.com/matmu/MouseFM/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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