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Bioconductor - Mergeomics (development version)

Mergeomics

This is the development version of Mergeomics; for the stable release version, see Mergeomics.

Integrative network analysis of omics data

Bioconductor version: Development (3.22)

The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).

Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang

Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>

Citation (from within R, enter citation("Mergeomics")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Mergeomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mergeomics")
Details biocViews Software Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL (>= 2) Depends R (>= 3.0.1) Imports System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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