This is the development version of InterCellar; for the stable release version, see InterCellar.
InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomicsBioconductor version: Development (3.22)
InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, based on functional annotation from Gene Ontology and pathway databases, InterCellar implements data-driven analyses to investigate cell-cell communication in one or multiple conditions.
Author: Marta Interlandi [cre, aut] ORCID: 0000-0002-6863-2552
Maintainer: Marta Interlandi <marta.interlandi01 at gmail.com>
Citation (from within R, entercitation("InterCellar")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("InterCellar")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("InterCellar")Follow Installation instructions to use this package in your R session.
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