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Bioconductor - GRmetrics (development version)

GRmetrics

This is the development version of GRmetrics; for the stable release version, see GRmetrics.

Calculate growth-rate inhibition (GR) metrics

Bioconductor version: Development (3.22)

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Citation (from within R, enter citation("GRmetrics")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GRmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")
GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition HTML R Script Reference Manual PDF NEWS Text Details biocViews CellBasedAssays, CellBiology, ImmunoOncology, Software, TimeCourse, Visualization Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL-3 Depends R (>= 4.0), SummarizedExperiment Imports drc, plotly, ggplot2, S4Vectors, stats System Requirements URL https://github.com/uc-bd2k/GRmetrics Bug Reports https://github.com/uc-bd2k/GRmetrics/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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